a glimpse of things to come

Installing a new software the old fashioned way (and a glimpse of things to come) Work from/to your Assignment_1/ folder. Create a file MyCommands.txt. Keep a record explaining what you did for this assignment in MyCommands.txt. 2 pts. 1. Download the file Put it in your Assignment_1/ folder. Decompress it. Use any method of your choosing. ### Muscle is a sequence alignment software. We will learn more about it later in the semester. 2 pts. 2. Dang! Look at that name! Rename muscle3.8.31i_86linux64 to a much simpler, more palatable name like muscle. 2 pts. 3. Modify your ~/.bash_profile so that muscle can be ran from anywhere without invoking absolute or relative paths. 2 pts. 4. Make a bash script called run_muscle.sh that: i) Concatenates all 16S fasta files from the 16S/ folder into a single multifasta called 16S.fasta. ii) Runs muscle on the 16S fasta file and generates an output file named 16S.aligned. ### NOTE: To learn how to do this, type muscle in the terminal to see a quick list of options. iii) Tells you that the Alignment is complete! when the job is done. iv) Make it executable. v) Run it. 2 pts. 5. Create a regular expression that will get all (and only) the desired lines from Regex.input (see Regex.output for desired output). i) Write that regular expression inside a file called MyRegex.txt. ii) Test it with grep and write the output in ### Note: this is a gene ontology output file (P = biological_process, F = molecular_function, C = cellular_component). For a custom paper on the above topic, place your order now! What We Offer: ¢ On-time delivery guarantee ¢ PhD-level writers ¢ Automatic plagiarism check ¢ 100% money-back guarantee ¢ 100% Privacy and Confidentiality ¢ High Quality custom-written papers